Thread: performance - read huge FASTA file line by line

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  1. 05-25-2017 #1
    laserlight
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    Quote Originally Posted by gevni
    For Exampe: I put printf statement for each iteration. In case of 10,000 first iteration take let say less then a milli second. where as in case of 100000 strings even the first iteration will take more then 30 second to print and so on.
    Do you mean "100000 strings" or "100000 characters"?

    Perhaps you should post your actual code with the printf example such that you obtained this "less than a milli second" versus "more then 30 second" difference.
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  2. 05-25-2017 #2
    gevni
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    100000 strings not the characters of each string. When the number of strings [lines] grow the code get slow even for the very first iteration .

    Quote Originally Posted by laserlight View Post
    Do you mean "100000 strings" or "100000 characters"?

    Perhaps you should post your actual code with the printf example such that you obtained this "less than a milli second" versus "more then 30 second" difference.
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