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Actually, I figured it out. I had already debugged a lot of problems, but had two major ones left.
One was that one of the algorithms just wasn't suited to multithreading.
The other problem was...

Alright, I'm trying to learn some basic threading and this is a problem I've been banging my head up against for a while.
I'm doing some image manipulation using boost::numeric::ublas::matrix, which...