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So is there a "Safe" strategy to resolving the problem. Essentially I'm the only one going to be using this class, and most of the files generated are similar.
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It really depends on the usage of the data. If all you ever do with it is, on the same computer architecture, write out files and read them back in, you can use the simplest format you can come up with.
If you want to exchange data with other architectures, that's where the trouble starts.
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ok ok ok, I think i was reading the data wrong in the loop. Little endian means if I have a value such as
0F FD;
then the resulting number will be
FD0F right. No wonder the other values were reading correctly when I read them.