No. Your definitions and your example do not match; the puzzle is ill-defined. Contradictory.
Let's redefine the variables.
Let Ki(N) be the divisors of N, with 1 ≤ Ki(N) < N.
Let A(N) be the sum of Ki, i.e. the sum of the divisors of N.
Let Si(N) be A(N) - Ki(N), i.e. the sum of the divisors of N except one divisor. Then,
N is a perfect number if and only if N = A(N)
and
N is a nearly perfect number if N = Si(N) exists
(it does not matter for which i, as long as it exists)
Note that each N corresponds to a single value A(N), but one or more Si(N).
(The number of i for Si(N) is the number of divisors in N, including 1 as a divisor.)
The issue with your problem statement is that you treat Si(N) as if it was unique. It isn't. Therefore, "Si(N) can't be greater than D" is ambiguous.
As an example, the divisors of 18 are 1, 2, 3, 6, and 9. So,
K1(18) = 1
K2(18) = 2
K3(18) = 3
K4(18) = 6
K5(18) = 9
A(18) = 1 + 2 + 3 + 6 + 9 = 21
S1(18) = 21 - 1 = 20
S2(18) = 21 - 2 = 19
S3(18) = 21 - 3 = 18
S4(18) = 21 - 6 = 15
S5(18) = 21 - 9 = 12
I suspect that you are trying to:
Count the number of natural numbers N, 2 ≤ N ≤ L, for which ∥Si(N) - N∥ ≤ D exists.
The problem is limited to 2 ≤ L ≤ 1000 and 0 ≤ D ≤ 10000.
There are other interpretations, too -- in particular, you might be looking at combinations with 0 to D Ki's subtracted from A instead --, so you do need to redefine your problem before any help is possible.